Species in the 240-way Zoonomia alignment

Scroll down for a searchable table of the 240 species included in the Zoonomia whole-genome alignment (project website is here)

Data files

Order	Family	Genus	Species	Common name	IUCN Status	Repeat Annotated?	NCBI Accession
Afrosoricida	Chrysochloridae	Chrysochloris	Chrysochloris asiatica	Cape golden mole	Least Concern	Yes	GCA_004027935.1
Afrosoricida	Tenrecidae	Echinops	Echinops telfairi	Lesser hedgehog tenrec	Least Concern	Yes	GCF_000313985.1
Afrosoricida	Tenrecidae	Microgale	Microgale talazaci	Talazac's shrew tenrec	Least Concern	No	GCA_004026705.1
Carnivora	Ailuridae	Ailurus	Ailurus fulgens	Lesser panda	Endangered	Yes	GCA_002007465.1
Carnivora	Canidae	Canis	Canis lupus familiaris	Domestic dog	Least Concern	Yes	GCA_004027395.1
Carnivora	Canidae	Canis	Canis lupus familiaris	Domestic dog	Least Concern	Yes	GCF_000002285.3
Carnivora	Canidae	Lycaon	Lycaon pictus	African hunting dog	Endangered	Yes	GCA_001887905.1
Carnivora	Canidae	Vulpes	Vulpes lagopus	Arctic fox	Least Concern	Yes	GCA_004023825.1
Carnivora	Eupleridae	Cryptoprocta	Cryptoprocta ferox	Fossa	Vulnerable	Yes	GCA_004023885.1
Carnivora	Felidae	Acinonyx	Acinonyx jubatus	Cheetah	Vulnerable	Yes	GCF_001443585.1
Carnivora	Felidae	Felis	Felis catus	Domestic cat	Least Concern	Yes	GCF_000181335.2
Carnivora	Felidae	Felis	Felis nigripes	Black-footed cat	Vulnerable	Yes	GCA_004023925.1
Carnivora	Felidae	Panthera	Panthera onca	Jaguar	Near threatened	Yes	GCA_004023805.1
Carnivora	Felidae	Panthera	Panthera pardus	Leopard	Vulnerable	Yes	GCA_001857705.1
Carnivora	Felidae	Panthera	Panthera tigris altaica	Amur tiger	Endangered	Yes	GCF_000464555.1
Carnivora	Felidae	Puma	Puma concolor	Puma	Least Concern	Yes	GCF_003327715.1
Carnivora	Herpestidae	Helogale	Helogale parvula	Dwarf mongoose	Least Concern	Yes	GCA_004023845.1
Carnivora	Herpestidae	Mungos	Mungos mungo	South African banded mongoose	Least Concern	Yes	GCA_004023785.1
Carnivora	Herpestidae	Suricata	Suricata suricatta	Meerkat	Least Concern	Yes	GCA_004023905.1
Carnivora	Hyaenidae	Hyaena	Hyaena hyaena	Striped hyena	Near threatened	Yes	GCA_004023945.1
Carnivora	Mephitidae	Spilogale	Spilogale gracilis	Western spotted skunk	Least Concern	Yes	GCA_004023965.1
Carnivora	Mustelidae	Enhydra	Enhydra lutris kenyoni	Sea otter	Endangered	Yes	GCF_002288905.1
Carnivora	Mustelidae	Mellivora	Mellivora capensis	Honey badger	Least Concern	Yes	GCA_004024625.1
Carnivora	Mustelidae	Mustela	Mustela putorius furo	Domestic ferret	Least Concern	Yes	GCF_000239315.1
Carnivora	Mustelidae	Pteronura	Pteronura brasiliensis	Giant otter	Endangered	Yes	GCA_004024605.1
Carnivora	Odobenidae	Odobenus	Odobenus rosmarus divergens	Pacific walrus	Vulnerable	Yes	GCF_000321225.1
Carnivora	Otariidae	Zalophus	Zalophus californianus	California sea lion	Least Concern	Yes	GCA_004024565.1
Carnivora	Phocidae	Leptonychotes	Leptonychotes weddellii	Weddell seal	Least Concern	Yes	GCF_000349705.1
Carnivora	Phocidae	Mirounga	Mirounga angustirostris	Northern elephant seal	Least Concern	Yes	GCA_004023865.1
Carnivora	Phocidae	Neomonachus	Neomonachus schauinslandi	Hawaiian monk seal	Endangered	Yes	GCA_002201575.1
Carnivora	Ursidae	Ailuropoda	Ailuropoda melanoleuca	Giant panda	Vulnerable	Yes	GCA_002007445.1
Carnivora	Ursidae	Ursus	Ursus maritimus	Polar bear	Vulnerable	Yes	GCF_000687225.1
Carnivora	Viverridae	Paradoxurus	Paradoxurus hermaphroditus	Asian palm civet	Least Concern	Yes	GCA_004024585.1
Cetartiodactyla	Antilocapridae	Antilocapra	Antilocapra americana	Pronghorn	Least Concern	Yes	GCA_004027515.1
Cetartiodactyla	Balaenidae	Eubalaena	Eubalaena japonica	North pacific right whale	Endangered	Yes	GCA_004363455.1
Cetartiodactyla	Balaenopteridae	Balaenoptera	Balaenoptera acutorostrata scammoni	Minke whale	Least Concern	No	GCF_000493695.1
Cetartiodactyla	Balaenopteridae	Balaenoptera	Balaenoptera bonaerensis	Antarctic minke whale	Near threatened	Yes	GCA_000978805.1
Cetartiodactyla	Bovidae	Ammotragus	Ammotragus lervia	Aoudad	Vulnerable	Yes	GCA_002201775.1
Cetartiodactyla	Bovidae	Beatragus	Beatragus hunteri	Hirola	Critically endangered	Yes	GCA_004027495.1
Cetartiodactyla	Bovidae	Bison	Bison bison bison	American bison	Near threatened	Yes	GCF_000754665.1
Cetartiodactyla	Bovidae	Bos	Bos indicus	Zebu cattle	Least Concern	Yes	GCA_000247795.2
Cetartiodactyla	Bovidae	Bos	Bos mutus	Wild yak	Vulnerable	Yes	GCF_000298355.1
Cetartiodactyla	Bovidae	Bos	Bos taurus	Cattle	Least Concern	Yes	GCF_000003205.7
Cetartiodactyla	Bovidae	Bubalus	Bubalus bubalis	Water buffalo	Least Concern	Yes	GCF_000471725.1
Cetartiodactyla	Bovidae	Capra	Capra aegagrus	Wild goat	Near threatened	Yes	GCA_000978405.1
Cetartiodactyla	Bovidae	Capra	Capra hircus	Goat	Least Concern	Yes	GCF_001704415.1
Cetartiodactyla	Bovidae	Hemitragus	Hemitragus hylocrius	Nilgiri tahr	Endangered	Yes	GCA_004026825.1
Cetartiodactyla	Bovidae	Ovis	Ovis aries	Sheep	Least Concern	Yes	GCF_000298735.2
Cetartiodactyla	Bovidae	Ovis	Ovis canadensis canadensis	Peninsular bighorn sheep	Endangered	Yes	GCA_004026945.1
Cetartiodactyla	Bovidae	Pantholops	Pantholops hodgsonii	Chiru	Near threatened	Yes	GCF_000400835.1
Cetartiodactyla	Bovidae	Saiga	Saiga tatarica	Steppe saiga	Critically endangered	Yes	GCA_004024985.1
Cetartiodactyla	Camelidae	Camelus	Camelus bactrianus	Bactrian camel	Least Concern	Yes	GCF_000767855.1
Cetartiodactyla	Camelidae	Camelus	Camelus dromedarius	Arabian camel	Least Concern	Yes	GCF_000767585.1
Cetartiodactyla	Camelidae	Camelus	Camelus ferus	Wild bactrian camel	Critically endangered	Yes	GCF_000311805.1
Cetartiodactyla	Camelidae	Vicugna	Vicugna pacos huacaya	Alpaca		Yes	GCA_000767525.1
Cetartiodactyla	Cervidae	Elaphurus	Elaphurus davidianus	Pere david's deer	Critically endangered	Yes	GCA_002443075.1
Cetartiodactyla	Cervidae	Odocoileus	Odocoileus virginianus texanus	White-tailed deer	Least Concern	No	GCA_002102435.1
Cetartiodactyla	Cervidae	Rangifer	Rangifer tarandus	Siberian reindeer	Vulnerable	Yes	GCA_004026565.1
Cetartiodactyla	Delphinidae	Orcinus	Orcinus orca	Killer whale	Data deficient	Yes	GCF_000331955.2
Cetartiodactyla	Delphinidae	Tursiops	Tursiops truncatus	Bottlenose dolphin	Least Concern	Yes	GCA_001922835.1
Cetartiodactyla	Eschrichtiidae	Eschrichtius	Eschrichtius robustus	Grey whale	Least Concern	Yes	GCA_004363415.1
Cetartiodactyla	Giraffidae	Giraffa	Giraffa tippelskirchi	Giraffe	Vulnerable	Yes	GCA_001651235.1
Cetartiodactyla	Giraffidae	Okapia	Okapia johnstoni	Okapi	Endangered	Yes	GCA_001660835.1
Cetartiodactyla	Hippopotamidae	Hippopotamus	Hippopotamus amphibius	Hippopotamus	Vulnerable	Yes	GCA_004027065.1
Cetartiodactyla	Iniidae	Inia	Inia geoffrensis	Amazon river dolphin	Endangered	Yes	GCA_004363515.1
Cetartiodactyla	Iniidae	Lipotes	Lipotes vexillifer	Yangtze river dolphin	Critically endangered	Yes	GCF_000442215.1
Cetartiodactyla	Monodontidae	Delphinapterus	Delphinapterus leucas	Beluga whale	Least Concern	Yes	GCF_002288925.1
Cetartiodactyla	Monodontidae	Monodon	Monodon monoceros	Narwhal	Least Concern	Yes	GCA_004026685.1
Cetartiodactyla	Moschidae	Moschus	Moschus moschiferus	Siberian musk deer	Vulnerable	Yes	GCA_004024705.1
Cetartiodactyla	Phocoenidae	Neophocaena	Neophocaena asiaeorientalis asiaeorientalis	Yangtze finless porpoise	Endangered	Yes	GCA_003031525.1
Cetartiodactyla	Phocoenidae	Phocoena	Phocoena phocoena	Harbor porpoise	Least Concern	Yes	GCA_004363495.1
Cetartiodactyla	Physeteridae	Kogia	Kogia breviceps	Pygmy sperm whale	Least Concern	Yes	GCA_004363705.1
Cetartiodactyla	Platanistidae	Platanista	Platanista minor	Indus river dolphin	Endangered	Yes	GCA_004363435.1
Cetartiodactyla	Suidae	Sus	Sus scrofa	Pig	Least Concern	Yes	GCF_000003025.5
Cetartiodactyla	Tayassuidae	Catagonus	Catagonus wagneri	Chacoan peccary	Endangered	Yes	GCA_004024745.1
Cetartiodactyla	Tragulidae	Tragulus	Tragulus javanicus	Java lesser chevrotain	Data deficient	Yes	GCA_004024965.1
Cetartiodactyla	Ziphiidae	Mesoplodon	Mesoplodon bidens	Sowerby’s beaked whale	Least Concern	Yes	GCA_004027085.1
Cetartiodactyla	Ziphiidae	Ziphius	Ziphius cavirostris	Cuvier's beaked whale	Least Concern	Yes	GCA_004364475.1
Chiroptera	Craseonycteridae	Craseonycteris	Craseonycteris thonglongyai	Bumblebee bat	Near threatened	Yes	GCA_004027555.1
Chiroptera	Hipposideridae	Hipposideros	Hipposideros armiger	Great roundleaf bat	Least Concern	Yes	GCA_001890085.1
Chiroptera	Hipposideridae	Hipposideros	Hipposideros galeritus	Cantor's leaf-nosed bat	Least Concern	Yes	GCA_004027415.1
Chiroptera	Megadermatidae	Megaderma	Megaderma lyra	Greater false vampire bat	Least Concern	Yes	GCA_004026885.1
Chiroptera	Molossidae	Tadarida	Tadarida brasiliensis	Mexican free-tailed bat	Least Concern	Yes	GCA_004025005.1
Chiroptera	Mormoopidae	Mormoops	Mormoops blainvillei	Ghost-faced bat	Least Concern	Yes	GCA_004026545.1
Chiroptera	Mormoopidae	Pteronotus	Pteronotus parnellii	Parnell's mustached bat	Least Concern	Yes	GCA_000465405.1
Chiroptera	Noctilionidae	Noctilio	Noctilio leporinus	Greater bulldog bat	Least Concern	Yes	GCA_004026585.1
Chiroptera	Phyllostomidae	Anoura	Anoura caudifer	Tailed tailless bat	Least Concern	Yes	GCA_004027475.1
Chiroptera	Phyllostomidae	Artibeus	Artibeus jamaicensis	Jamacian fruit-eating bat	Least Concern	Yes	GCA_004027435.1
Chiroptera	Phyllostomidae	Carollia	Carollia perspicillata	Seba's short-tailed bat	Least Concern	Yes	GCA_004027735.1
Chiroptera	Phyllostomidae	Desmodus	Desmodus rotundus	Common vampire bat	Least Concern	Yes	GCA_002940915.2
Chiroptera	Phyllostomidae	Micronycteris	Micronycteris hirsuta	Hairy big-eared bat	Least Concern	Yes	GCA_004026765.1
Chiroptera	Phyllostomidae	Tonatia	Tonatia saurophila	Stripe-headed round-eared bat	Least Concern	Yes	GCA_004024845.1
Chiroptera	Pteropodidae	Eidolon	Eidolon helvum	Straw-colored fruit bat	Near threatened	Yes	GCA_000465285.1
Chiroptera	Pteropodidae	Macroglossus	Macroglossus sobrinus	Long-tongued fruit bat	Least Concern	Yes	GCA_004027375.1
Chiroptera	Pteropodidae	Pteropus	Pteropus alecto	Black flying fox	Least Concern	Yes	GCF_000325575.1
Chiroptera	Pteropodidae	Pteropus	Pteropus vampyrus	Large flying fox	Near threatened	Yes	GCF_000151845.1
Chiroptera	Pteropodidae	Rousettus	Rousettus aegyptiacus	Egyptian fruit bat	Least Concern	Yes	GCA_004024865.1
Chiroptera	Rhinolophidae	Rhinolophus	Rhinolophus sinicus	Chinese rufous horseshoe bat	Least Concern	Yes	GCA_001888835.1
Chiroptera	Vespertilionidae	Eptesicus	Eptesicus fuscus	Big brown bat	Least Concern	Yes	GCF_000308155.1
Chiroptera	Vespertilionidae	Lasiurus	Lasiurus borealis	Eastern red bat	Least Concern	Yes	GCA_004026805.1
Chiroptera	Vespertilionidae	Miniopterus	Miniopterus natalensis	Atal long-fingered bat	Least Concern	Yes	GCF_001595765.1
Chiroptera	Vespertilionidae	Miniopterus	Miniopterus schreibersii	Common bent-wing bat	Vulnerable	Yes	GCA_004026525.1
Chiroptera	Vespertilionidae	Murina	Murina aurata feae	Ashy-gray tube-nosed bat	Least Concern	Yes	GCA_004026665.1
Chiroptera	Vespertilionidae	Myotis	Myotis brandtii	Brandt's bat	Least Concern	Yes	GCF_000412655.1
Chiroptera	Vespertilionidae	Myotis	Myotis davidii	David's myotis	Least Concern	Yes	GCF_000327345.1
Chiroptera	Vespertilionidae	Myotis	Myotis lucifugus	Little brown bat	Least Concern	Yes	GCF_000147115.1
Chiroptera	Vespertilionidae	Myotis	Myotis myotis	Greater mouse-eared bat	Least Concern	Yes	GCA_004026985.1
Chiroptera	Vespertilionidae	Pipistrellus	Pipistrellus pipistrellus	Common pipistrelle	Least Concern	Yes	GCA_004026625.1
Cingulata	Dasypodidae	Chaetophractus	Chaetophractus vellerosus	Screaming hairy armadillo	Least Concern	Yes	GCA_004027955.1
Cingulata	Dasypodidae	Dasypus	Dasypus novemcinctus	Nine-banded armadillo	Least Concern	Yes	GCF_000208655.1
Cingulata	Dasypodidae	Tolypeutes	Tolypeutes matacus	Southern three-banded armadillo	Near threatened	Yes	GCA_004025125.1
Dermoptera	Cynocephalidae	Galeopterus	Galeopterus variegatus	Sunda flying lemur	Least Concern	Yes	GCA_004027255.1
Eulipotyphla	Erinaceidae	Erinaceus	Erinaceus europaeus	Western european hedgehog	Least Concern	Yes	GCF_000296755.1
Eulipotyphla	Solenodontidae	Solenodon	Solenodon paradoxus	Hispaniolan solenodon	Least Concern	Yes	GCA_004363575.1
Eulipotyphla	Soricidae	Crocidura	Crocidura indochinensis	Indochinese shrew	Least Concern	Yes	GCA_004027635.1
Eulipotyphla	Soricidae	Sorex	Sorex araneus	Common shrew	Least Concern	Yes	GCF_000181275.1
Eulipotyphla	Talpidae	Condylura	Condylura cristata	Star-nosed mole	Least Concern	Yes	GCF_000260355.1
Eulipotyphla	Talpidae	Scalopus	Scalopus aquaticus	Eastern mole	Least Concern	Yes	GCA_004024925.1
Eulipotyphla	Talpidae	Uropsilus	Uropsilus gracilis	Gracile shrew mole	Least Concern	Yes	GCA_004024945.1
Hyracoidea	Procaviidae	Heterohyrax	Heterohyrax brucei	Yellow- spotted rock hyrax	Least Concern	Yes	GCA_004026845.1
Hyracoidea	Procaviidae	Procavia	Procavia capensis	Rock hyrax	Least Concern	Yes	GCA_004026925.1
Lagomorpha	Leporidae	Lepus	Lepus americanus	Snowshoe hare	Least Concern	Yes	GCA_004026855.1
Lagomorpha	Leporidae	Oryctolagus	Oryctolagus cuniculus cuniculus	Rabbit	Endangered	Yes	GCF_000003625.3
Lagomorpha	Ochotonidae	Ochotona	Ochotona princeps	American pika	Least Concern	Yes	GCF_000292845.1
Macroscelidea	Macroscelididae	Elephantulus	Elephantulus edwardii	Cape elephant shrew	Least Concern	Yes	GCA_004027355.1
Perissodactyla	Equidae	Equus	Equus asinus asinus	Donkey	Least Concern	Yes	GCF_001305755.1
Perissodactyla	Equidae	Equus	Equus caballus	Horse	Least Concern	Yes	GCF_000002305.2
Perissodactyla	Equidae	Equus	Equus przewalskii	Przewalski's horse	Endangered	Yes	GCF_000696695.1
Perissodactyla	Rhinocerotidae	Ceratotherium	Ceratotherium simum cottoni	Northern white rhinoceros	Critically endangered	Yes	GCA_004027795.1
Perissodactyla	Rhinocerotidae	Ceratotherium	Ceratotherium simum simum	Southern white rhinoceros	Near threatened	Yes	GCF_000283155.1
Perissodactyla	Rhinocerotidae	Dicerorhinus	Dicerorhinus sumatrensis sumatrensis	Sumatran rhinoceros	Critically endangered	Yes	GCA_002844835.1
Perissodactyla	Rhinocerotidae	Diceros	Diceros bicornis	Black rhinoceros	Critically endangered	Yes	GCA_004027315.1
Perissodactyla	Tapiridae	Tapirus	Tapirus indicus	Malayan tapir	Endangered	Yes	GCA_004024905.1
Perissodactyla	Tapiridae	Tapirus	Tapirus terrestris	South american tapir	Vulnerable	Yes	GCA_004025025.1
Pholidota	Manidae	Manis	Manis javanica	Malayan pangolin	Critically endangered	No	GCF_001685135.1
Pholidota	Manidae	Manis	Manis pentadactyla	Chinese pangolin	Critically endangered	Yes	GCA_000738955.1
Pilosa	Megalonychidae	Choloepus	Choloepus didactylus	Linnaeus’s two-toed sloth	Least Concern	Yes	GCA_004027855.1
Pilosa	Megalonychidae	Choloepus	Choloepus hoffmanni	Hoffmann’s two-toed sloth	Least Concern	Yes	GCA_000164785.2
Pilosa	Myrmecophagidae	Myrmecophaga	Myrmecophaga tridactyla	Giant anteater	Vulnerable	Yes	GCA_004026745.1
Pilosa	Myrmecophagidae	Tamandua	Tamandua tetradactyla	Southern tamandua	Least Concern	Yes	GCA_004025105.1
Primates	Aotidae	Aotus	Aotus nancymaae	Nancy ma’s night monkey	Vulnerable	Yes	GCA_000952055.2
Primates	Atelidae	Alouatta	Alouatta palliata	Mantled howler	Endangered	Yes	GCA_004027835.1
Primates	Atelidae	Ateles	Ateles geoffroyi	Geoffroy's spider monkey	Endangered	Yes	GCA_004024785.1
Primates	Cebidae	Callithrix	Callithrix jacchus	Common marmoset	Least Concern	Yes	GCA_002754865.1
Primates	Cebidae	Cebus	Cebus albifrons	White-fronted capuchin	Least Concern	Yes	GCA_004027755.1
Primates	Cebidae	Cebus	Cebus capucinus imitator	White-faced sapajou	Vulnerable	No	GCF_001604975.1
Primates	Cebidae	Saguinus	Saguinus imperator	Emperor tamarin	Least Concern	Yes	GCA_004024885.1
Primates	Cebidae	Saimiri	Saimiri boliviensis boliviensis	Bolivian squirrel monkey	Least Concern	Yes	GCF_000235385.1
Primates	Cercopithecidae	Cercocebus	Cercocebus atys	Sooty mangabey	Vulnerable	Yes	GCF_000955945.1
Primates	Cercopithecidae	Cercopithecus	Cercopithecus neglectus	De brazza's monkey	Least Concern	Yes	GCA_004027615.1
Primates	Cercopithecidae	Chlorocebus	Chlorocebus sabaeus	Green monkey	Least Concern	Yes	GCF_000409795.2
Primates	Cercopithecidae	Colobus	Colobus angolensis palliatus	Angolan colobus	Vulnerable	Yes	GCF_000951035.1
Primates	Cercopithecidae	Erythrocebus	Erythrocebus patas	Patas monkey	Near threatened	Yes	GCA_004027335.1
Primates	Cercopithecidae	Macaca	Macaca fascicularis	Crab-eating macaque	Vulnerable	Yes	GCF_000364345.1
Primates	Cercopithecidae	Macaca	Macaca mulatta	Rhesus monkey	Least Concern	Yes	GCF_000772875.2
Primates	Cercopithecidae	Macaca	Macaca nemestrina	Southern pig-tailed macaque	Vulnerable	Yes	GCF_000956065.1
Primates	Cercopithecidae	Mandrillus	Mandrillus leucophaeus	Drill	Endangered	Yes	GCF_000951045.1
Primates	Cercopithecidae	Nasalis	Nasalis larvatus	Proboscis monkey	Endangered	Yes	GCA_004027105.1
Primates	Cercopithecidae	Papio	Papio anubis	Olive baboon	Least Concern	Yes	GCA_000264685.2
Primates	Cercopithecidae	Piliocolobus	Piliocolobus tephrosceles	Ugandan red colobus	Endangered	Yes	GCA_002776525.1
Primates	Cercopithecidae	Pygathrix	Pygathrix nemaeus	Red-shanked douc langur	Critically endangered	Yes	GCA_004024825.1
Primates	Cercopithecidae	Rhinopithecus	Rhinopithecus bieti	Black snub-nosed monkey	Endangered	Yes	GCF_001698545.1
Primates	Cercopithecidae	Rhinopithecus	Rhinopithecus roxellana	Golden snub-nosed monkey	Endangered	Yes	GCF_000769185.1
Primates	Cercopithecidae	Semnopithecus	Semnopithecus entellus	Northern plains gray langur	Least Concern	Yes	GCA_004025065.1
Primates	Cheirogaleidae	Cheirogaleus	Cheirogaleus medius	Fat-tailed dwarf lemur	Vulnerable	Yes	GCA_004024725.1
Primates	Cheirogaleidae	Microcebus	Microcebus murinus	Gray mouse lemur	Least Concern	Yes	GCA_000165445.3
Primates	Cheirogaleidae	Mirza	Mirza coquereli	Coquerel's giant mouse lemur	Endangered	Yes	GCA_004024645.1
Primates	Daubentoniidae	Daubentonia	Daubentonia madagascariensis	Aye-aye	Endangered	Yes	GCA_004027145.1
Primates	Galagidae	Otolemur	Otolemur garnettii	Small-eared galago	Least Concern	Yes	GCF_000181295.1
Primates	Hominidae	Gorilla	Gorilla gorilla gorilla	Western lowland gorilla	Critically endangered	Yes	GCA_900006655.3
Primates	Hominidae	Homo	Homo sapiens	Human	Least Concern	Yes	GCA_000001405.27
Primates	Hominidae	Pan	Pan paniscus	Bonobo	Endangered	Yes	GCF_000258655.2
Primates	Hominidae	Pan	Pan troglodytes	Chimpanzee	Endangered	Yes	GCA_002880755.3
Primates	Hominidae	Pongo	Pongo abelii	Sumatran orangutan	Critically endangered	Yes	GCA_002880775.3
Primates	Hylobatidae	Nomascus	Nomascus leucogenys	Northern white-cheeked gibbon	Critically endangered	Yes	GCF_000146795.2
Primates	Indridae	Indri	Indri indri	Indri	Critically endangered	Yes	GCA_004363605.1
Primates	Indridae	Propithecus	Propithecus coquereli	Coquerel's sifaka	Critically endangered	Yes	GCF_000956105.1
Primates	Lemuridae	Eulemur	Eulemur flavifrons	Sclater's lemur	Critically endangered	Yes	GCA_001262665.1
Primates	Lemuridae	Eulemur	Eulemur fulvus	Common brown lemur	Vulnerable	Yes	GCA_004027275.1
Primates	Lemuridae	Lemur	Lemur catta	Ring tailed lemur	Endangered	Yes	GCA_004024665.1
Primates	Lorisidae	Nycticebus	Nycticebus coucang	Sunda slow loris	Endangered	Yes	GCA_004027815.1
Primates	Pitheciidae	Pithecia	Pithecia pithecia	White-faced saki	Least Concern	Yes	GCA_004026645.1
Primates	Pitheciidae	Plecturocebus	Plecturocebus donacophilus	White-eared titi	Least Concern	Yes	GCA_004027715.1
Proboscidea	Elephantidae	Loxodonta	Loxodonta africana	African savanna elephant	Endangered	Yes	GCF_000001905.1
Rodentia	Aplodontiidae	Aplodontia	Aplodontia rufa	Mountain beaver	Least Concern	Yes	GCA_004027875.1
Rodentia	Bathyergidae	Fukomys	Fukomys damarensis	Damara mole-rat	Least Concern	Yes	GCF_000743615.1
Rodentia	Bathyergidae	Heterocephalus	Heterocephalus glaber	Naked mole-rat	Least Concern	Yes	GCF_000247695.1
Rodentia	Capromyidae	Capromys	Capromys pilorides	Desmarest's hutia	Least Concern	Yes	GCA_004027915.1
Rodentia	Castoridae	Castor	Castor canadensis	North american beaver	Least Concern	Yes	GCA_004027675.1
Rodentia	Caviidae	Cavia	Cavia aperea	Brazilian guinea pig	Least Concern	No	GCA_000688575.1
Rodentia	Caviidae	Cavia	Cavia porcellus	Domestic guinea pig	Least Concern	Yes	GCF_000151735.1
Rodentia	Caviidae	Cavia	Cavia tschudii	Montane guinea pig	Least Concern	Yes	GCA_004027695.1
Rodentia	Caviidae	Dolichotis	Dolichotis patagonum	Patagonian mara	Near threatened	Yes	GCA_004027295.1
Rodentia	Caviidae	Hydrochoerus	Hydrochoerus hydrochaeris	Capybara	Least Concern	Yes	GCA_004027455.1
Rodentia	Chinchillidae	Chinchilla	Chinchilla lanigera	Long-tailed chinchilla	Endangered	Yes	GCF_000276665.1
Rodentia	Cricetidae	Ellobius	Ellobius lutescens	Transcaucasian mole vole	Least Concern	Yes	GCA_001685075.1
Rodentia	Cricetidae	Ellobius	Ellobius talpinus	Northern mole vole	Least Concern	Yes	GCA_001685095.1
Rodentia	Cricetidae	Mesocricetus	Mesocricetus auratus	Golden hamster	Vulnerable	Yes	GCF_000349665.1
Rodentia	Cricetidae	Microtus	Microtus ochrogaster	Prairie vole	Least Concern	Yes	GCF_000317375.1
Rodentia	Cricetidae	Ondatra	Ondatra zibethicus	Muskrat	Least Concern	Yes	GCA_004026605.1
Rodentia	Cricetidae	Onychomys	Onychomys torridus	Scorpion mouse	Least Concern	Yes	GCA_004026725.1
Rodentia	Cricetidae	Peromyscus	Peromyscus maniculatus bairdii	Prairie deer mouse	Least Concern	Yes	GCF_000500345.1
Rodentia	Cricetidae	Sigmodon	Sigmodon hispidus	Hispid cotton rat	Least Concern	Yes	GCA_004025045.1
Rodentia	Ctenodactylidae	Ctenodactylus	Ctenodactylus gundi	Common gundi	Least Concern	Yes	GCA_004027205.1
Rodentia	Ctenomyidae	Ctenomys	Ctenomys sociabilis	Social tuco-tuco	Critically endangered	Yes	GCA_004027165.1
Rodentia	Cuniculidae	Cuniculus	Cuniculus paca	Lowland paca	Least Concern	Yes	GCA_004365215.1
Rodentia	Dasyproctidae	Dasyprocta	Dasyprocta punctata	Central american agouti	Least Concern	Yes	GCA_004363535.1
Rodentia	Dinomyidae	Dinomys	Dinomys branickii	Pacarana	Least Concern	Yes	GCA_004027595.1
Rodentia	Dipodidae	Allactaga	Allactaga bullata	Gobi jerboa	Least Concern	Yes	GCA_004027895.1
Rodentia	Dipodidae	Jaculus	Jaculus jaculus	Lesser egyptian jerboa	Least Concern	No	GCF_000280705.1
Rodentia	Dipodidae	Zapus	Zapus hudsonius	Meadow jumping mouse	Least Concern	Yes	GCA_004024765.1
Rodentia	Gliridae	Glis	Glis glis	Edible dormouse	Least Concern	Yes	GCA_004027185.1
Rodentia	Gliridae	Graphiurus	Graphiurus murinus	Woodland doormouse	Least Concern	Yes	GCA_004027655.1
Rodentia	Gliridae	Muscardinus	Muscardinus avellanarius	Hazel dormouse	Least Concern	Yes	GCA_004027005.1
Rodentia	Heteromyidae	Dipodomys	Dipodomys ordii	Ord's kangaroo rat	Least Concern	Yes	GCF_000151885.1
Rodentia	Heteromyidae	Dipodomys	Dipodomys stephensi	Stephen's kangaroo rat	Vulnerable	Yes	GCA_004024685.1
Rodentia	Heteromyidae	Perognathus	Perognathus longimembris pacificus	Pacific pocket mouse	Endangered	Yes	GCA_004363475.1
Rodentia	Hystricidae	Hystrix	Hystrix cristata	Crested porcupine	Least Concern	Yes	GCA_004026905.1
Rodentia	Muridae	Acomys	Acomys cahirinus	Cairo spiny mouse	Least Concern	Yes	GCA_004027535.1
Rodentia	Muridae	Meriones	Meriones unguiculatus	Mongolian jird	Least Concern	Yes	GCA_004026785.1
Rodentia	Muridae	Mus	Mus caroli	Ryukyu mouse	Least Concern	Yes	GCA_900094665.2
Rodentia	Muridae	Mus	Mus musculus	House mouse	Least Concern	Yes	GCF_000001635.26
Rodentia	Muridae	Mus	Mus pahari	Shrew mouse	Least Concern	Yes	GCA_900095145.2
Rodentia	Muridae	Mus	Mus spretus	Western mediterranean mouse	Least Concern	Yes	GCA_001624865.1
Rodentia	Muridae	Psammomys	Psammomys obesus	Fat sand rat	Least Concern	Yes	GCA_002215935.1
Rodentia	Muridae	Rattus	Rattus norvegicus	Brown rat	Least Concern	Yes	GCF_000001895.5
Rodentia	Myocastoridae	Myocastor	Myocastor coypus	Coypu	Least Concern	Yes	GCA_004027025.1
Rodentia	Nesomyidae	Cricetomys	Cricetomys gambianus	Gambian pouched rat	Least Concern	Yes	GCA_004027575.1
Rodentia	Nesomyidae	Cricetulus	Cricetulus griseus	Chinese hamster	Least Concern	Yes	GCA_900186095.1
Rodentia	Octodontidae	Octodon	Octodon degus	Degu	Least Concern	Yes	GCF_000260255.1
Rodentia	Petromuridae	Petromus	Petromus typicus	Dassie rat	Least Concern	Yes	GCA_004026965.1
Rodentia	Sciuridae	Ictidomys	Ictidomys tridecemlineatus	Thirteen-lined ground squirrel	Least Concern	Yes	GCF_000236235.1
Rodentia	Sciuridae	Marmota	Marmota marmota marmota	Alpine marmot	Least Concern	Yes	GCF_001458135.1
Rodentia	Sciuridae	Spermophilus	Spermophilus dauricus	Daurian ground squirrel	Least Concern	Yes	GCA_002406435.1
Rodentia	Sciuridae	Xerus	Xerus inauris	Cape ground squirrel	Least Concern	Yes	GCA_004024805.1
Rodentia	Spalacidae	Nannospalax	Nannospalax galili	Upper galilee mountains blind mole rat	Data deficient	Yes	GCF_000622305.1
Rodentia	Thryonomyidae	Thryonomys	Thryonomys swinderianus	Greater cane rat	Least Concern	Yes	GCA_004025085.1
Scandentia	Tupaiidae	Tupaia	Tupaia chinensis	Northern tree shrew	Least Concern	Yes	GCF_000334495.1
Scandentia	Tupaiidae	Tupaia	Tupaia tana	Large treeshrew	Least Concern	Yes	GCA_004365275.1
Sirenia	Trichechidae	Trichechus	Trichechus manatus latirostris	Florida manatee	Endangered	Yes	GCF_000243295.1
Tubulidentata	Orycteropodidae	Orycteropus	Orycteropus afer afer	Aardvark	Least Concern	Yes	GCA_004365145.1

Genomes in Zoonomia alignment

Data files